Installation

To install phcue-ck, go to the release page and download the appropriate phcue-ck binary for your system.

OSX

Download the phcue-ck_v<version>_x86_64-apple-darwin.zip file and unzip it. Move the phcue-ck binary to your PATH directory.

Linux

Download the phcue-ck_v<version>_x86_64-unknown-linux-musl.tar.gz file and untar it. Move the phcue-ck binary to your PATH directory.

Windows

We are currently not providing a binary for Windows. If this is something you need, please open an issue and we will get back to you.

Installation with conda

conda install -c conda-forge -c bioconda phcue-ck

Installation with cargo

If you have cargo installed and want to install phcue-ck using cargo, you can do so by running:

cargo install phcue-ck

This will add the phcue-ck binary to $HOME/.cargo/bin. Make sure to add that folder to your PATH environment variable. For instance, in bash shell, you can run the following:

echo 'export PATH="$HOME/.cargo/bin:$PATH"' >> $HOME/.bashrc

Using with Docker

You can run phcue-ck inside a Docker container by running:

docker run -it --rm -v $PWD:/app lighthousegenomics/phcue-ck:latest phcue-ck --help